User-Level Workflow Design A Bioinformatics Perspective / [electronic resource] :
edited by Anna-Lena Lamprecht.
- XXII, 223 p. 84 illus. online resource.
- Lecture Notes in Computer Science, 8311 0302-9743 ; .
- Lecture Notes in Computer Science, 8311 .
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
9783642453892
10.1007/978-3-642-45389-2 doi
Computer science.
Software engineering.
Computer logic.
Computer simulation.
Bioinformatics.
Computer Science.
Software Engineering.
Logics and Meanings of Programs.
Simulation and Modeling.
Information Systems Applications (incl. Internet).
Computational Biology/Bioinformatics.
QA76.758
005.1
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
9783642453892
10.1007/978-3-642-45389-2 doi
Computer science.
Software engineering.
Computer logic.
Computer simulation.
Bioinformatics.
Computer Science.
Software Engineering.
Logics and Meanings of Programs.
Simulation and Modeling.
Information Systems Applications (incl. Internet).
Computational Biology/Bioinformatics.
QA76.758
005.1