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Comparative Genomics [electronic resource] : 19th International Conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings / edited by Lingling Jin, Dannie Durand.

Contributor(s): Jin, Lingling [editor.] | Durand, Dannie [editor.] | SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Bioinformatics: 13234Publisher: Cham : Springer International Publishing : Imprint: Springer, 2022Edition: 1st ed. 2022.Description: XII, 341 p. 100 illus., 78 illus. in color. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783031062209.Subject(s): Biomathematics | Bioinformatics | Algorithms | Computer networks  | Computer science -- Mathematics | Application software | Mathematical and Computational Biology | Computational and Systems Biology | Design and Analysis of Algorithms | Computer Communication Networks | Mathematics of Computing | Computer and Information Systems ApplicationsAdditional physical formats: Printed edition:: No title; Printed edition:: No titleDDC classification: 570.285 Online resources: Click here to access online
Contents:
Evolution -- On the Comparison of Bacteriophage Populations -- Syntenic Dimensions of Genomic Evolution -- Phylogenetics -- Fast and Accurate Branch Support Calculation for Distance-based Phylogenetic Placements -- The Sackin Index of Simplex Networks -- Phylogenetic Placement Problem: A Hyperbolic Embedding Approach -- Phylogenetic Network Dissimilarity Measures That Take Branch Lengths Into Account -- Homology and Reconciliation -- The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes -- Reconciliation with Segmental Duplication, Transfer, Loss and Gain -- Quantifying Hierarchical Conflicts in Homology Statements -- On Partial Gene Transfer and its Impact on Gene Tree Reconstruction -- Genome Rearrangements -- Sorting by k-Cuts on Signed Permutations -- A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions -- Chromothripsis Rearrangements Are Informed by 3D Genome Organization -- Metagenomics -- Using Computational Synthetic Biology Toolsto Modulate Gene Expression within a Microbiome -- Metagenomics Binning of Long Reads Using Read-Overlap Graphs -- A Mixed Integer Linear Programming Algorithm for Plasmid Binning -- Genomic Sequencing -- Benchmarking Penalized Regression Methods in Machine Learning for Single Cell RNA Sequencing Data -- Deciphering the Tissue-speci c Regulatory Role of Intronless Genes Across Cancers.
In: Springer Nature eBookSummary: This book constitutes the refereed proceedings of the 19th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG which took place in La Jolla, USA, during May 20-21, 2022. The 18 full papers included in this book were carefully reviewed and selected from 28 submissions. The papers were organized in topical sections on evolution; phylogenetics; homology and reconciliation; genome rearrangements; metagenomics; and genomic sequencing. .
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Evolution -- On the Comparison of Bacteriophage Populations -- Syntenic Dimensions of Genomic Evolution -- Phylogenetics -- Fast and Accurate Branch Support Calculation for Distance-based Phylogenetic Placements -- The Sackin Index of Simplex Networks -- Phylogenetic Placement Problem: A Hyperbolic Embedding Approach -- Phylogenetic Network Dissimilarity Measures That Take Branch Lengths Into Account -- Homology and Reconciliation -- The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes -- Reconciliation with Segmental Duplication, Transfer, Loss and Gain -- Quantifying Hierarchical Conflicts in Homology Statements -- On Partial Gene Transfer and its Impact on Gene Tree Reconstruction -- Genome Rearrangements -- Sorting by k-Cuts on Signed Permutations -- A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions -- Chromothripsis Rearrangements Are Informed by 3D Genome Organization -- Metagenomics -- Using Computational Synthetic Biology Toolsto Modulate Gene Expression within a Microbiome -- Metagenomics Binning of Long Reads Using Read-Overlap Graphs -- A Mixed Integer Linear Programming Algorithm for Plasmid Binning -- Genomic Sequencing -- Benchmarking Penalized Regression Methods in Machine Learning for Single Cell RNA Sequencing Data -- Deciphering the Tissue-speci c Regulatory Role of Intronless Genes Across Cancers.

This book constitutes the refereed proceedings of the 19th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG which took place in La Jolla, USA, during May 20-21, 2022. The 18 full papers included in this book were carefully reviewed and selected from 28 submissions. The papers were organized in topical sections on evolution; phylogenetics; homology and reconciliation; genome rearrangements; metagenomics; and genomic sequencing. .

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