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User-Level Workflow Design [electronic resource] : A Bioinformatics Perspective / by Anna-Lena Lamprecht.

By: Lamprecht, Anna-Lena [author.].
Contributor(s): SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Programming and Software Engineering: 8311Publisher: Berlin, Heidelberg : Springer Berlin Heidelberg : Imprint: Springer, 2013Edition: 1st ed. 2013.Description: XXII, 223 p. 84 illus. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783642453892.Subject(s): Software engineering | Computer science | Computer simulation | Application software | Bioinformatics | Software Engineering | Computer Science Logic and Foundations of Programming | Computer Modelling | Computer and Information Systems Applications | Computational and Systems BiologyAdditional physical formats: Printed edition:: No title; Printed edition:: No titleDDC classification: 005.1 Online resources: Click here to access online
Contents:
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
In: Springer Nature eBookSummary: The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
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The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.

The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

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